SubtiBank SubtiBank
yorL [2019-08-05 09:45:56]
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yorL [2019-08-05 09:45:56]

similar to DNA polymerase III (alpha subunit)
locus
BSU_20340
pI
5.94
mw
150.31 kDa
protein length
1305 aa Sequence Blast
gene length
3918 bp Sequence Blast
function
unknown
product
unknown
essential
no
ec
2.7.7.7
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.2|DNA replication/ based on similarity]
  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.2|SP-beta prophage]

    • Gene

    Coordinates
    2,175,596 2,179,513

    The protein

    Catalyzed reaction/ biological activity

  • Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1) (according to Swiss-Prot)

    • Protein family

  • DNA polymerase type-C family (with [protein|FB97DF0C147FB29944F60214CB9BC1803861DAA0|PolC] and [protein|65B5EA4DBDF5B260DED754B8A7B226AA88F17B55|DnaE], according to UniProt)

    • Structure

  • [PDB|3E0D] (from Thermus aquaticus, corresponds to aa 4 ... 1010 of YorL, 28% identity) [pubmed|18691598]

    • Biological materials

    Mutant

  • BKE20340 ([gene|48BC0FA9901F174472EB070C539EC75EC7C10E88|yorL]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE20340 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ACATCCTATCAACTTTTCTC, downstream forward: _UP4_TAAATCTTAACTGATATAGG
  • BKK20340 ([gene|48BC0FA9901F174472EB070C539EC75EC7C10E88|yorL]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK20340 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ACATCCTATCAACTTTTCTC, downstream forward: _UP4_TAAATCTTAACTGATATAGG

    • References

    Research papers

  • 18691598